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wiki:users [2019/02/21 12:54] – chuckwiki:users [2019/11/06 12:06] (current) – [Export options] the main splitstree.org site has vanished; Wikipedia gives current working links dominik
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 {{ wiki:other_witnesses.png }} {{ wiki:other_witnesses.png }}
  * Then, click {{wiki:generate_apparatus.png|Generate apparatus}}   * Then, click {{wiki:generate_apparatus.png|Generate apparatus}} 
 +
 +=== Apparatus options ===
 +
 +There are a number of additional options for how to deal with TEI tags, punctuation, and orthography. [[wiki:tei|TEI tags]] can be set to to either:
 + * Hide: removes the tag and its contents completely
 + * Ignore all: ignores the tag and its contents in the comparison
 + * Ignore tag only: ignores the tag but keeps the text inside the tag for comparison
 + * Include: considers the tag to be significant in the comparison
 +
 +See [[wiki:orthography|Punctuation and Orthography]] for information on the options and algorithms used to filter out insignificant variation.
  
 ==== Using the apparatus ==== ==== Using the apparatus ====
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  * In order to compile the exported LaTeX file, you will need the reledmac package. By default, the file uses the [[https://brill.com/page/1228|Brill typeface]] as well as a few characters from [[https://chchch.github.io/PedanticIndic/|Pedantic Devanagari]]. These can be swapped out for different fonts by changing the corresponding lines in the LaTeX file.  * In order to compile the exported LaTeX file, you will need the reledmac package. By default, the file uses the [[https://brill.com/page/1228|Brill typeface]] as well as a few characters from [[https://chchch.github.io/PedanticIndic/|Pedantic Devanagari]]. These can be swapped out for different fonts by changing the corresponding lines in the LaTeX file.
  
- * FASTA is a format used in bioinformatics. The exported FASTA file treats each text as a sequence of letters, with no spaces. They can be aligned using the  [[https://mafft.cbrc.jp/alignment/software/|MAFFT]] sequence alignment program in text mode. The resulting alignment can be used to produce phylogenetic trees and networks, using software such as [[https://www.mesquiteproject.org/|Mesquite]] or [[http://www.splitstree.org/|SplitsTree]].+ * FASTA is a format used in bioinformatics. The exported FASTA file treats each text as a sequence of letters, with no spaces. They can be aligned using the  [[https://mafft.cbrc.jp/alignment/software/|MAFFT]] sequence alignment program in text mode. The resulting alignment can be used to produce phylogenetic trees and networks, using software such as [[https://www.mesquiteproject.org/|Mesquite]] or [[https://en.wikipedia.org/wiki/SplitsTree|SplitsTree]].

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